Inside Punjab’s largest testing lab, staffers tackling virus reveal ‘war’ conditions

Scientists examine samples at the Public Health Reference Laboratory in Lahore, April 23, 2020. (AN Photo/Natasha Zia)
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Updated 26 April 2020
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Inside Punjab’s largest testing lab, staffers tackling virus reveal ‘war’ conditions

  • Major obstacle for lab staffers is human error and mishandling of samples at point of collection
  • There are 40 testing labs in Pakistan with 16 in Punjab alone

LAHORE: On a warm April morning, over a dozen microbiologists clock in to begin their eight-hour shift at the Public Health Reference Laboratory (PHRL) in Lahore.
Dressed in hazmat suits, the men and women move between three adjacent rooms, extracting and testing a colorless liquid.
The staff of more than 40 work around the clock in different shifts. 
There are no day offs, and breaks are short. 
“We even work on Sundays,” said Dr. Asim Altaf, secretary at the Punjab health care department, who supervises the lab, “That is how it is during war.” 
The laboratory is one of the largest testing facilities for coronavirus in Pakistan, and the largest in Punjab. On most days, it can diagnose up to 2,000 test samples. Of those tests, 1,100 are diagnosed on an automatic machine. In the rest, the genetic material has to be extracted manually. 
In this painstakingly long process, the main obstacle they face is human error on the stage when samples are collected.
Once a health care worker takes a swab from suspected COVID-19 patients, he or she must follow strict guidelines before dispatching it. Each swab, from the nose or throat, must be locked in a sealed tube, barcoded, zipped in a plastic bag and finally stored in a cool box for transportation.
However, some samples the lab receives are incorrectly barcoded, wrapped in plastic tape, or are not the right temperature to be tested, which leads to incorrect results.
“This really comprises the quality of the test conducted,” explains Dr. Andleeb Hanif, the head microbiologist at the PHRL and the focal person for laboratories in Punjab, “If a leaked tube is thrown in a plastic bag with others, and not kept separate, then it will contaminate the rest of the samples.”
This means that a sample of even one infected person can make samples from healthy people turn up as COVID-19 positive.
“The percentage of such errors is very high at the moment,” Dr. Altaf told Arab News. Recently, he received a batch of 800 samples from Bahawalpur in Punjab, of which only 261 could be processed. 

“The labels were wrong, the samples had leaked, the tags had rubbed off. This affects our testing capacity and accuracy.”
But Dr. Altaf’s department is rushing to fill the gap, so Punjab can increase its testing capacity from 4,200 to 5,000 in the coming days. The staff carrying out the tests are being retrained and a new system has been rolled out, in which the name, age and city of each patient will be barcoded. 
Still, he admits, much will depend on whether those shipping the samples follow guidelines.
A single test for the deadly virus costs the state about Rs2,800 ($18), according to the officials at the health department. One test kit is for between 24 and 50 people. Sometimes samples need to be taken twice, if there are doubts about accuracy.
There are kits that can fail to detect the virus if its quantity is little, explains Dr. Hanif, “China itself states that the kits it manufactures have a margin of error of 25 percent. So sometimes, we have to reverify.”
Apart from kits provided by the federal government to Punjab, which were bought from China, the Public Health Reference Laboratory has also procured kits from Turkey and the United Kingdom. The World Health Organization (WHO) has sent a separate consignment as well.
Pakistan has recorded over 12,500 COVID-19 cases and more than 265 related deaths. At least 42 percent of those who tested positive were in Punjab, the country’s most populous province. Local transmission stands at 79 percent, according to data from the National Command and Operation Center, which runs the country’s central database to track the virus. 
According to Dr. Altaf, no “super spreaders,” or individuals with mild symptoms who end up infecting a large population, have so far been detected in Punjab.  
“We are getting more samples from quarantine centers in the province, because there is a lot of circulation of the virus over there. Those people are exposed to each other and potentially one person can spread the virus to 100,” he said.
In a recent press briefing, Punjab chief minister Usman Buzdar said the province wants to significantly increase its testing capacity, aiming to take it up to 10,000 tests a day. Medical staff at the Public Health Reference Laboratory say it will increase pressure on them, until more labs open up. There are currently 40 testing facilities in the country, with 16 in Punjab alone.
What worries them more however, is not additional workload but the Punjab government’s decision to ease a three-week lockdown by reopening several industrial sectors and allowing congregational prayers at mosques.
“Of course, this will impact us,” said Dr. Hanif, “Even before the lockdown was eased, we were getting a lot of samples to test in a day.” She added that as local transmission is increasing in the country, and the province, “You’ll have less chances of knowing who is unknowingly carrying the virus. If you open the lockdown, you will have a lot of unknowns.”


England Women’s cricket coach using AI to pick team ahead of series with Pakistan

Updated 03 May 2024
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England Women’s cricket coach using AI to pick team ahead of series with Pakistan

  • Jon Lewis says technology worked in multi-format Women’s Ashes series against arch-rivals Australia
  • Pakistan Women’s National Cricket Team will play Twenty20 and ODI series in England later this month

LONDON: England Women’s cricket coach Jon Lewis revealed Friday he is using artificial intelligence to aid team selection, saying the technology helped his side square last season’s Ashes.

Lewis first became familiar with the work of London-based PSi when he took charge of the UP Warriorz franchise in India’s Women’s Premier League.

Now the 48-year-old former England paceman uses the company to assist with his decisions about squad composition, team balance and in-game match-ups between players.

The system plots projected outcomes depending on the composition of each side.
“I can send multiple different line-ups to the PSi in London and they run, I think, about 250,000 simulations per team that I send, with all different permutations that could happen through the game,” he said.

We are able to run simulated teams versus the simulated opposition to give us an idea about how those teams may match up against each other.

“I came across it during my time at UP Warriorz and it’s something I looked at and thought it could add some value to the England Women’s cricket team.”

Lewis said he still favored a “people-first approach” but he added: “What data can do is give you a really objective view of what could happen and what has happened previously. I think it will help with borderline decisions in terms of selection and match-ups.”

Lewis, who has spoken to England’s rugby union coach Steve Borthwick about his own use of the PSi model, said the system had proved its worth as his side drew last season’s multi-format Women’s Ashes series against arch-rivals Australia.

“There was one selection particularly last year, one period of the Ashes that we targeted as a team,” said Lewis, speaking at the announcement of England’s squad for T20 and ODI series at home to Pakistan later this month.

“There were a couple of selections where AI really helped because both players I was thinking about picking were both in really good form and were both really selectable and it did help with those selections.

“We saw a real strength in Australia and we matched up our strength to that. That worked really, really well and it helped us win the T20 series in particular, which got us back in the Ashes.”

AI is becoming an increasing feature of top-level sport, with International Olympic Committee president Thomas Bach saying last month it could help identify talented athletes “in every corner of the world.”

He said AI could also provide more athletes with access to personalized training methods.


Pakistan launches special cybercrime unit under controversial PECA law, shifts role from FIA

Updated 03 May 2024
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Pakistan launches special cybercrime unit under controversial PECA law, shifts role from FIA

  • The agency will be led by director general with 15-year experience in digital forensics or public administration
  • Pakistan’s information minister recently spoke against online harassment, emphasized upholding of digital rights

ISLAMABAD: Pakistan has established a new investigation unit under the Prevention of Electronic Crimes Act (PECA) 2016, tasked solely with focusing on cybercrimes in the country, a role previously performed by a dedicated wing of the Federal Investigation Agency (FIA).

The PECA law was originally enacted to combat various forms of cybercrime, including cyber terrorism, unauthorized access, electronic fraud and online harassment, aiming to enhance the security of cyberspace for users and businesses.

However, the law stirred controversy, particularly because its provisions were seen by critics as tools that could potentially curb freedom of speech and suppress dissent.

These concerns were also validated by instances of journalists being booked under the law, with courts raising objections regarding its application.

“There shall hereby stand established the National Cyber Crime Investigation Agency (NCCIA) to exercise jurisdiction under the Act and the Federal Investigation Agency (FIA) shall cease to perform functions as designated investigation agency under the Act,” said a notification taken out by the Ministry of Information Technology and Telecommunication on April 24 that referred to the PECA law.

“All personnel, cases, inquiries, investigations, assets, liabilities, rights, obligations, privileges and matters related thereto or connected therewith subsisting immediately before commencement of these rules in respect of the defunct cybercrime wing of the FIA shall stand transferred to the NCCIA,” it added.

The new investigation agency will be led by a director general who will be appointed by the government for two years.

The individual performing the role will have at least 15 years of experience “in the field of computer sciences, digital forensics, cyber technology, law, public administration, information technology, telecommunication or related fields enabling him to deal with offenses under the Act.”

The notification said the FIA’s “defunct” cybercrime wing would continue to operate until suitable appointments are made to run the new agency.

Pakistan’s information minister Attaullah Tarar announced only a day ago that the government was setting up a new authority to end online harassment and uphold the digital rights of the people.


Pakistan calls for immediate ceasefire in Gaza ahead of OIC summit in Gambia

Updated 03 May 2024
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Pakistan calls for immediate ceasefire in Gaza ahead of OIC summit in Gambia

  • Ishaq Dar demands joint action by Muslim states at an OIC preparatory meeting to confront rising Islamophobia
  • The Pakistani deputy PM will meet leaders from other Muslim countries at the two-day summit starting Saturday

ISLAMABAD: Pakistan on Friday demanded an immediate and unconditional ceasefire in Gaza along with a humanitarian corridor for international aid agencies to provide relief to the people of Palestine ahead of the Organization of Islamic Cooperation’s summit in Gambia this weekend.

The ceasefire call was issued by the country’s newly appointed deputy prime minister, Ishaq Dar, while addressing the summit’s preparatory meeting in the Gambian capital of Banjul, where he arrived on Wednesday.

Dar is scheduled to participate in the OIC summit, convened to discuss and address major issues affecting the Muslim world, ranging from political and economic challenges to social and cultural matters.

These summits aim to promote Muslim solidarity in social and political affairs, coordinate efforts to safeguard the interests and well-being of Muslims and work toward resolving conflicts and issues in the Muslim world.

“Dar expressed Pakistan’s deep concern about the ongoing genocide and starvation of Gaza people and called for the reactivation of OIC’s Ministerial Committee on Israeli aggression against the Palestinians, offering Pakistan’s assistance to the body,” said the state-owned Associated Press of Pakistan (APP) news agency.

The report said he called for an end the Israeli siege leading to a humanitarian crisis for the people of Palestine and to hold Prime Minister Benjamin Netanyahu’s administration accountable for its “war crimes.”

“Ishaq Dar stressed the imperative of joint action by the OIC to confront rising Islamophobia, which was manifested by an increasing number of incidents of discrimination, violence, and incitement against Muslims around the world,” the APP report continued.

“He stated that while global social media platforms had set for themselves a clear understanding and the responsibility of content relating to ‘Antisemitism’ and ‘Holocaust denial’, same was not the case for blasphemous and anti-Islamic content that was responsible for widespread distress among Muslims and the global wave of Islamophobia,” it added.

The Pakistani deputy prime minister is scheduled to interact with leaders of other Muslim states at the two-day OIC summit beginning on Saturday.


Pakistan expands Makkah Route Initiative to Karachi, plans flights for Hajj pilgrims from May 9

Updated 03 May 2024
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Pakistan expands Makkah Route Initiative to Karachi, plans flights for Hajj pilgrims from May 9

  • Saudi staff will have access to eight counters and required equipment at Karachi airport’s international departure area
  • Pakistan first joined the Makkah Route Initiative in 2019 as part of a pilot program that was introduced in Islamabad

ISLAMABAD: In a major development for Hajj pilgrims in Pakistan, the government plans to launch flight operation to Saudi Arabia under the expanded Makkah Route Initiative to the southern port city of Karachi from May 9, according to an official statement released on Friday.
The initiative, launched by Saudi authorities in collaboration with several Muslim-majority states, facilitates the annual Islamic pilgrimage for numerous people traveling to Makkah.
Under the initiative, tasks like immigration processing are completed in the pilgrim’s home country, allowing them to bypass these procedures upon arrival in Saudi Arabia. This not only reduces waiting times and congestion at Saudi airports but also enhances the overall experience for pilgrims by making their journey more comfortable and focused on spirituality.
Pakistan joined the initiative in 2019 as part of a pilot program that began in Islamabad. Its success led to plans for the program’s expansion to other cities, with pilgrims from Karachi preparing to benefit from it for the first time this year.
“The Hajj flights under the Road to Makkah Project will commence on 09 May and conclude on 08 June,” the statement circulated by Pakistan Civil Aviation Authority said, adding that all the relevant agencies at Karachi’s Jinnah International Airport have assured of unwavering commitment for the successful implementation of the program.
The official statement was released after a meeting at the Karachi airport that focused on the initiative.
All stakeholders, including airline representatives, ground handling agencies, border health services, airport security, Federal Investigation Agency, customs and Anti-Narcotics Force were present during the deliberations.
The meeting focused on the procedures involved at different stages of Hajj pilgrims’ stay at the airport, beginning with their arrival at the facility until their departure, following Saudi immigration formalities.
It was agreed that Saudi staff would have access to eight counters and all the required equipment in the international departure satellite area.
The airport manager stressed the importance of providing a seamless experience to pilgrims and urged all agencies to treat and welcome them as honored guests.


Senior journalist among three killed in bomb attack in Balochistan on World Press Freedom Day

Updated 03 May 2024
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Senior journalist among three killed in bomb attack in Balochistan on World Press Freedom Day

  • Khuzdar Press Club president was killed after a motorcyclist attached an explosive device to his vehicle
  • Journalists say media workers were also killed in the past but their murderers were never brought to justice

QUETTA: A senior journalist was killed in a powerful blast that claimed at least two other lives in Pakistan’s volatile southwestern Balochistan province, confirmed a senior administration official on Friday, after a motorcyclist attached an explosive device to his vehicle at a bustling market area.

The incident that took place in Khuzdar, a remote city in the region, on World Press Freedom Day sent shockwaves through the media community in the province that has witnessed much violence in the last couple of decades.

Maulvi Muhammad Siddique Mengal, the targeted journalist, was currently the president of the Khuzdar Press Club and had also received threats from unknown individuals in the past.

“President of the Khuzdar Press Club Maulvi Muhammad Siddique Mengal and two bike riders near his vehicle were killed in the attack,” Deputy Commissioner Khuzdar Arif Khan Zarkoon told Arab News after the emergence of the CCTV footage of the attack. “Five people were injured who were shifted to the District Hospital Khuzdar for treatment.”

“Mengal was traveling in his private vehicle to a mosque to offer Friday prayers when an unknown man attached a magnetic explosive device to his vehicle which exploded at Chamrook Chowk and killed him on the spot,” he added.

So far, no group has claimed responsibility for the attack.

“Maulvi Siddique Mengal had been receiving threats from unknown people for the last year,” said one of the local journalists who requested anonymity. “He survived a firing attack nine months ago. Journalism has become a life-threatening profession in Khuzdar. We even closed Khuzdar Press Club for more than six months after threats by unknown people in 2012.”

Pakistan is considered one of the most dangerous places in the world for journalists, particularly for those working in the country’s western Balochistan and Khyber Pakhtunkhwa provinces. According to the Committee to Protect Journalists (CPJ), an international organization working for journalists’ safety, at least 62 media workers have been killed in targeted attacks in Pakistan since 1992.

The Balochistan Union of Journalists (BUJ) has strongly condemned Mengal’s murder, demanding the arrest of the perpetrators of the Khuzdar blast.

Khalil ur Rehman, the BUJ president, said targeting a journalist on World Press Freedom Day was an attempt to suppress the voice of media workers in Balochistan.

“Forty-two journalists have lost their lives in Balochistan over the last two decades, while 10 journalists were killed in Khuzdar district during the last decade, but not a single murderer of journalists has been arrested yet,” he told Arab News. “Journalists in Balochistan are already facing security challenges, but this attack indicates that targeted attacks against journalists have started again.”

Mir Sarfaraz Bugti, chief minister of Balochistan, has strongly condemned Mengal’s killing, ordering an investigation into it.

“The Balochistan government will utilize all resources to arrest the perpetrators involved in the killing of the senior journalist in Khuzdar,” he said in a statement. “Terrorists involved in sabotaging peace in Balochistan won’t succeed.”